MmuALTA0020707-1/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000007812 | Zfp655
Description
zinc finger protein 655 [Source:MGI Symbol;Acc:MGI:1919861]
Coordinates
chr5:145992592-145994471:+
Coord C1 exon
chr5:145992592-145992700
Coord A exon
NA
Coord C2 exon
chr5:145994334-145994471
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
GGTCATTGTCCCCTGAACAGGGA
3' ss Score
6.21
Exon sequences
Seq C1 exon
AAGGCGTCAGCCTTCTGGCAGTCGAGAGAGTGGCCCCGGACAGGCTGGTGCAGCTGAGCGAGGAGCGCCTCCGTGACGGGACAGTCTCCAGGCCCGCCTCTCCACCTGG
Seq A exon
NA
Seq C2 exon
GGATGGAGGAGGTAACATCCCAAGAAGCCGCAGAGTCACCCAGGGGCCACTTCCAGCCTTTGGAGAACCAGTCTGAATGTCTTTCCCCAGAGCTTCGGTTTCTGCAGGACACGGACATGGAGCAGGGATTCAGTGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000007812-0-1,0-0-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.743
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACGGGACAGTCTCCAGG
R:
TCAGACTGGTTCTCCAAAGGC
Band lengths:
113-137
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: