Special

MmuALTA0020733-2/4 @ mm10

Alternative 3'ss

Gene
ENSMUSG00000034429 | Zfp707
Description
zinc finger protein 707 [Source:MGI Symbol;Acc:MGI:1916270]
Coordinates
chr15:75969123-75973208:+
Coord C1 exon
chr15:75969123-75969404
Coord A exon
chr15:75973082-75973122
Coord C2 exon
chr15:75973123-75973208
Length
41 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGC
5' ss Score
8.69
3' ss Seq
TGGGGCCATCTGTTTGTCAGGTG
3' ss Score
6.88
Exon sequences
Seq C1 exon
GATTGGCGTATTTCCGCTGGAGAGTTGAAGTCAGTGCGGCGCGCACGGGAGTTGACGTTTAAAGGTGCAGGAGCTGGGGAATCCGACGGTGGTGCTGCTTTGGGTTGCTCTGCTCCGCGCCACTGCGCTTGCGCTGAAGCCGACCCTACCCCCGGCATCCCCCGCGGCCTTCAGATGCGCCGGCGTCTTGCTGCAGCTGCTGCTCTCGGCGAAGCTCGACGAGAGCGCTGCTTCCGACGGGGCAGCGCTCTTCCCGAGCGAGCTAACGGCGATGCTCCTCCG
Seq A exon
GTGCCAGTGACCTTCAGAGACGTGGCTGTGTACTTCTGCAG
Seq C2 exon
GGAAGAATGGGAGTGTCTCAGTCCTAGCCAGAGGACCCTTTACCGGAATGTGATGCTGGAGAACTTCAGGAACTTGAATGAACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034429-0-7,0-6,0-5,0-4-2/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact





	

	
ORF disruption when splice site is used (sequence inclusion)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.107 A=NA C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NA

							
C2:
PF0135222=KRAB=FE(90.6=100)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000105592





     
                   









    
Main Skipping Isoform:
ENSMUSP00000119705





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000120565
          









    
Other Skipping Isoforms:
ENSMUSP00000105593
  



Associated events







Other assemblies


mm9




Conservation


Human
(hg38)
chr8:143691073-143691199 
HIGH PSI
HsaALTA1049596-1/2
(ZNF707)
Human
(hg19)
No conservation detected
Rat
(rn6)
chr7:117029850-117029851 
Cow
(bosTau6)
chr17:74563169-74563170 
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
CGTCTTGCTGCAGCTGCT

				
R: 
CGGTAAAGGGTCCTCTGGCTA

				
Band lengths: 
144-185

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types





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