Special

MmuALTA0020734-1/2 @ mm9

Alternative 3'ss

Gene
ENSMUSG00000012640 | Zfp715
Description
zinc finger protein 715 [Source:MGI Symbol;Acc:MGI:1917180]
Coordinates
chr7:50566401-50568617:-
Coord C1 exon
chr7:50568474-50568617
Coord A exon
NA
Coord C2 exon
chr7:50566401-50566555
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
GATTTCCTTCTGTGCCACAGCTA
3' ss Score
6.66
Exon sequences
Seq C1 exon
AAATGTTGTAGTCATTCGAGTGTTACTTCGCTGGCGGGTCCGCGAGGTGGTTTGGAACTTTTCCATCCGGGACTCTTCGGCTTCCGTGGGCGGAAGTCGCCGTCAGGCGTGCCGTGTGCAGAGCTCTCGGCCGGGCAGTGTGAG
Seq A exon
NA
Seq C2 exon
CTAGCCCTTCTTCAACGTCCATGACTCTTGAGGGATTTGGATTTGCTACGAAGAAAACGTCAAGAACAGAAGACAGAGGGGCCATGGCTGCAGATCCAAATTTCCAACAGAAGAGCCAGCCATTGGGTGCAGAGGAGCAGCCTGAGTCCTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000012640-0-4,0-3-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact





	

	
5' UTR





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=NA A=NA C2=0.662
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NA

							
A:
NA

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000103620





     
                   









    
Main Skipping Isoform:
ENSMUSP00000040282





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000012796, ENSMUSP00000114600
          









    
Other Skipping Isoforms:
ENSMUSP00000040282f388A, ENSMUSP00000122812, ENSMUSP00000126156, ENSMUSP00000129988
  



Associated events







Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr19:52076466-52076467 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr18:57902606-57902607 
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
TTCGAGTGTTACTTCGCTGGC

				
R: 
AATCCCTCAAGAGTCATGGACG

				
Band lengths: 
167-232

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"