MmuALTA0020737-1/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000059975 | Zfp74
Description
zinc finger protein 74 [Source:MGI Symbol;Acc:MGI:107784]
Coordinates
chr7:30728510-30736912:-
Coord C1 exon
chr7:30736733-30736912
Coord A exon
NA
Coord C2 exon
chr7:30728510-30728559
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
TGTTCTTTTTGCCAGTTCAGCTT
3' ss Score
2.91
Exon sequences
Seq C1 exon
CAGCTCTCATTTTCAGAGTTCTTCCTGCGCTGAGGAGCCTTTTATAAACTCAATATTTATTGAATGTTGGACATATATCAGTCAATTGTTGGTGTGTGGGATATAGCAGCGAACAAAAGAAGCAGTGACCCCCCCCCCTCTCATGATGCTTACATTGCCGAGGACCAGATAATAAACAAA
Seq A exon
NA
Seq C2 exon
CTTGCTCAGGACCTCCCCCCTAAAAAGAAGAGGAAATGACCGAGTCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059975-1-5,1-4-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCGAACAAAAGAAGCAGT
R:
GGGGGAGGTCCTGAGCAAG
Band lengths:
94-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: