MmuALTA0020753-3/3 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000011427 | Zfp790
Description
zinc finger protein 790 [Source:MGI Symbol;Acc:MGI:1923431]
Coordinates
chr7:30601091-30608163:+
Coord C1 exon
chr7:30601091-30601308
Coord A exon
chr7:30607999-30608088
Coord C2 exon
chr7:30608089-30608163
Length
90 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
CCCTCTGACCTTCCTCCAAGGAA
3' ss Score
7.96
Exon sequences
Seq C1 exon
ATTCGACTTCCTGCTGGAAGTTGGGGCCACAGACCGGAATGTAGGACCCCAGCGCTAAGACCAACCCAGCATTGGCAGTCTGACCAAGAGGAAGCCTCGTCCTGTAGGTGCAAGAGTACGCAATGACAGCCCTGAGCGTGTGTGAGAGAAAGCATAGGGAGGTTAGATTGCATGCGCGGCTGGATCTGGGAGGAGTTGGACGGCAGAGAAACTGCGAG
Seq A exon
GAAGAAAACGGCCTTTGTTCTTGTCCACTTAAATGGTCTGTGGAAAGCCAGCTGCCTCATGGTTCTCTTTCCTGTGCGCTGTCTTCTCAG
Seq C2 exon
AAGCTGGCCTCATCGACATAGGAATCAAGACGAGGACTGACTGGCCACTTTTAGGAGTTTCCAATCATGGCCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000011427-0-2,0-1,0-0-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGTACGCAATGACAGCCC
R:
TGGGCCATGATTGGAAACTCC
Band lengths:
181-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: