MmuALTA0020766-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000071064 | Zfp827
Description
zinc finger protein 827 [Source:MGI Symbol;Acc:MGI:2444807]
Coordinates
chr8:81699732-81702978:+
Coord C1 exon
chr8:81699732-81699869
Coord A exon
chr8:81702789-81702806
Coord C2 exon
chr8:81702807-81702978
Length
18 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
TTTTTCTTTTTTGAGAGCAGTTT
3' ss Score
0.44
Exon sequences
Seq C1 exon
AGACCGAGAAGATTGTCCTTGAGGCAGGAAACGGACTGCCATCCTGGAAATTCAATGACCAGCTCTTCCCTTGCGATGTGTGTGGGAAAGTGTTCGGACGACAGCAGACATTGTCTCGACACCTCTCATTGCACACAG
Seq A exon
TTTTGGTTTCTCCCCCAG
Seq C2 exon
AGGAAAGAAAATACAAATGCCACTTGTGCCCCTATGCTGCTAAGTGCCGTGCGAACCTGAACCAGCATCTGACCGTGCACTCTGTGAAGCTCGTGAGTACCGACACCGAGGACATAGTCAGTGCTGTCACTTCTGAGGGCAGTGATGGGAAGAAACACCCGTATTACTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000071064-11-14,11-13-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=NA C2=0.067
Domain overlap (PFAM):
C1:
PF0009621=zf-C2H2=WD(100=48.9)
A:
NA
C2:
PF139091=zf-H2C2_5=WD(100=41.4),PF058767=Terminase_GpA=PU(36.9=70.7)
Other Skipping Isoforms:
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTGTGGGAAAGTGTTCGG
R:
CACTTAGCAGCATAGGGGCAC
Band lengths:
108-126
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: