MmuALTA0020787-1/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000033972 | Zfp944
Description
zinc finger protein 944 [Source:MGI Symbol;Acc:MGI:2442394]
Coordinates
chr17:22495790-22496491:-
Coord C1 exon
chr17:22496407-22496491
Coord A exon
NA
Coord C2 exon
chr17:22495790-22495882
Length
0 bp
Sequences
Splice sites
5' ss Seq
GCGGTAAGT
5' ss Score
11.37
3' ss Seq
AATCTCTTTCCCACATGCAGGTC
3' ss Score
9.29
Exon sequences
Seq C1 exon
TTATGTTAATGGGCACCTGAGTTAGCAGTTTATCCGGAGTTTCTTTGAGACCTAATAAGGTCTTGGCCAGCCTGGTATGCATGCG
Seq A exon
NA
Seq C2 exon
GTCTCCCACTGCTCAGCCAGTTCTGCTCACCTGTGAATGAGAACTAAGAGCCCTGGGTGATGAAGACAGAGGAGACTGTAGCCAAGGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033972-3-2,3-1-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.333
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCACCTGAGTTAGCAGTTTA
R:
CTGGATCCTTGGCTACAGTCTC
Band lengths:
167-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: