MmuALTA0020793-3/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000067931 | Zfp948
Description
zinc finger protein 948 [Source:MGI Symbol;Acc:MGI:3040683]
Coordinates
chr17:21567046-21569127:+
Coord C1 exon
chr17:21567046-21567245
Coord A exon
chr17:21569016-21569066
Coord C2 exon
chr17:21569067-21569127
Length
51 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
3' ss Seq
GTACTATGTTACAAATCCAGGTG
3' ss Score
6.73
Exon sequences
Seq C1 exon
AGGACCTGTCAGGTCCAGAGCTCGCGGCCCTGCCCCGTGGGGAATCGCGTGGTTCAGACCTGGGGTCAGAGGACACAGAGGACTTCGTGGGAAGCTAAAACTCCAGGCAGCCGCGGGTGCCTTGCGGGGCATCCTGGAGGAATCAGCAATCAGTCGCAAAGCGGCGAGAACCGGAGCCAGGCGGCCCTGGAACCGCCCAG
Seq A exon
GTGCTTTTTGAAGAATCACTTTCTCATGTACAGGGTTCGCTGATCACCCAG
Seq C2 exon
ACCTGCTTATCTGTGGAAACCTAGAAGGTGGAGAGGGAGAACACAGTAGCTAAGGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000067931-1-3,1-2,1-1-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAAAACTCCAGGCAGCCGC
R:
TCTCCCTCTCCACCTTCTAGG
Band lengths:
146-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types