MmuALTA0020794-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000032425 | Zfp949
Description
zinc finger protein 949 [Source:MGI Symbol;Acc:MGI:1918890]
Coordinates
chr9:88548020-88552861:+
Coord C1 exon
chr9:88548020-88548508
Coord A exon
chr9:88552662-88552715
Coord C2 exon
chr9:88552716-88552861
Length
54 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
GTTTTCTCACATTCCTGTAGATC
3' ss Score
9.66
Exon sequences
Seq C1 exon
GGCTCATGGGTAATGTAGTCCCTAACATACAAGGCCCTCCCACACAGGAGCAGGTAAACAGCTCTGACATTTGGCTGGTAGGCATCTCTGTGTCCTGCGCTCTCTTGGCAGCTACCGCATAGAAAGTCGCATCCAGGCTCTGTGCTGACGCCTTTGCTCAGGCTGTGCGTTTCTTGCAGGGTTTCTGAAGGCGGGTGGGAAAGACGAAAAGAGGAGAGTGGTCTCGGAACCTTCGGGAAGCGGGACCCGTGCCTTCTACTTCAGTGGAAACAGAAACATAGGTGGGTCTTGGAGGAGGGACTGAGTCGCAGTTCGAGGGCGGACCGCAGCGGCTCAGGGGAAGGTGACTGTGAGACCCATCGTTCCCAGTCGGAACAGTCGGCCTGAACAGGGCTTTAATGGTTGCTTTATCCGAAGACTGCGCTAGGAGTATTTGGATCTGTGATTCCATCAGTCCAAAAGGGCCAACACGGACGCTCTGCCAAGGAG
Seq A exon
ATCAGTATCTGGACTGGTCTCAGCTGGGAAATGACTGTATTTTCCTGCCTTCAG
Seq C2 exon
TGTCAGATGAAGTTGATGTCATCAGTGCTTTGAGGCTGCTAAGTTCTGGGTGTTCAGTCCCACATCCAGTGGCTCCTGCTGAGTCTTCTCAAGGCTCTATTTCCATCAAGCTAGCACCAAGGTTCGTTACAACATAGCTGTGTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032425-3-7,3-6-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTATCCGAAGACTGCGCT
R:
ACCCAGAACTTAGCAGCCTCA
Band lengths:
136-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types