MmuALTA0020842-2/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000002266 | Zim1
Description
zinc finger, imprinted 1 [Source:MGI Symbol;Acc:MGI:1341879]
Coordinates
chr7:6688624-6689564:-
Coord C1 exon
chr7:6689488-6689564
Coord A exon
chr7:6688690-6688811
Coord C2 exon
chr7:6688624-6688689
Length
122 bp
Sequences
Splice sites
5' ss Seq
CCAGTAGGT
5' ss Score
5.41
3' ss Seq
TGACATTGCTTCCCTATTAGGGC
3' ss Score
7.3
Exon sequences
Seq C1 exon
AAGTTTGTTCCCTGTGCCTACAAATAGGATCATCACAAATGCCGATAACTCCAGCTCCAGGGCATCCGACATCACCA
Seq A exon
GGCCATGGAGCCTGAAGACATTACATCTGCCTGAGGCCACCAAGCTGCAGAGCTAAGAATTTAAACCCAGACCATCCGGGTCCATAACCCTCACCTAGTAGTTCTACTTCCAATTCATACAG
Seq C2 exon
TATTTCATTCTCTCACCATGAAGAGGAGTGTCTCAGAGGTGAAGACTAAAGCCCCAGTTAATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002266-3-6,3-5,3-4-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.574
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTTTGTTCCCTGTGCCTACA
R:
TTAACTGGGGCTTTAGTCTTCACC
Band lengths:
138-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types