Special

MmuALTA0020846-2/2 @ mm9

Alternative 3'ss

Gene
ENSMUSG00000021327 | Zkscan3
Description
zinc finger with KRAB and SCAN domains 3 [Source:MGI Symbol;Acc:MGI:1919989]
Coordinates
chr13:21488308-21494613:-
Coord C1 exon
chr13:21494541-21494613
Coord A exon
chr13:21488444-21488446
Coord C2 exon
chr13:21488308-21488443
Length
3 bp
Sequences
Splice sites
5' ss Seq
CGGGTGGGT
5' ss Score
6.14
3' ss Seq
TGGTTCTCTCCACCTCTCAGTAG
3' ss Score
4.84
Exon sequences
Seq C1 exon
GTGCCCCGCCCCCCGGGGTCGGACTTTCGACACTTTTGTGACTGCGGGGTGCTACGAGGTGCTGCGTTCGCGG
Seq A exon
TAG
Seq C2 exon
TCTTTTACAGAAATACAACTCACAGCTACAGTGAAACGGGAGAACTGCTTGGTTCGGGATGGCTAGAGAATCAAGGGAAAGCACAACCTTGGACTCACACTCTGCAGAGGACCAGATGGAGCTACTGGTCATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021327-0-4,0-3-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact





	

	
5' UTR





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=NA A=NA C2=0.325
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NA

							
A:
NA

							
C2:
PF0202312=SCAN=PU(97.9=67.6)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000068424





     
                   









    
Main Skipping Isoform:
ENSMUSP00000112135





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000112862
          









    
Other Skipping Isoforms:
ENSMUSP00000019612, ENSMUSP00000089352, ENSMUSP00000112134
  



Associated events







Other assemblies


mm10




Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr6:28327300-28327301 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr23:30193929-30193930 
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
ACTTTTGTGACTGCGGGGTG

				
R: 
ACCAAGCAGTTCTCCCGTTTC

				
Band lengths: 
95-98

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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