MmuALTA0020877-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000042446 | Zmym4
Description
zinc finger, MYM-type 4 [Source:MGI Symbol;Acc:MGI:1915035]
Coordinates
chr4:126900605-126902693:-
Coord C1 exon
chr4:126902543-126902693
Coord A exon
chr4:126900746-126900748
Coord C2 exon
chr4:126900605-126900745
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
TTCTTTCTTCCTCTTTTAAGTAG
3' ss Score
6.76
Exon sequences
Seq C1 exon
ATGGCCAAATGTGATGGTTGCAAGAGACAGGGTAAACTCAGTGAATCATTGAAATGGCGAGGTGACATAAAACACTTTTGTAACCTGCTTTGCATCTTGATGTTCTGTCATCAGCAAACTGTATGTGACCCACCTTTACAAAACAATGCAG
Seq A exon
TAG
Seq C2 exon
CAAGTATTTCCATGGTTCAAGCTGCTTCTGCAGGGCCTCCGTCCCTCAGAAAAGATTCAACTCCAGTCATTGCTAATGTGGTATCTTTAGCAAGTGCTCCTGCTGCCCAGCCCACAGCAAACACCAACAGCGTCTTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042446-37-34,37-33-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.122
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(91.9=66.7)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAACTGTATGTGACCCACCT
R:
TCTTTTCTGAGGGACGGAGGC
Band lengths:
93-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types