MmuALTA1000863-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000001855 | Nup214
Description
nucleoporin 214 [Source:MGI Symbol;Acc:MGI:1095411]
Coordinates
chr2:31991264-31994976:+
Coord C1 exon
chr2:31991264-31991425
Coord A exon
chr2:31994523-31994804
Coord C2 exon
chr2:31994805-31994976
Length
282 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
CTCCTTGGTTCTCGTTACAGGAA
3' ss Score
9.93
Exon sequences
Seq C1 exon
ATGAAGAAAAGACTCTTCCGCCTGCTCCGGTTCTCCTGTTACTTTCAACAGATGGTGTGCTTTGTCCATTTTATATGATCAACCAAAATCCTGGGGTTAGGTCCCTAATCAAGACCTTGGAACTGATCTCAACAGAAGGAGAGCGACAGCCTAAGTCCTCAG
Seq A exon
GAAGTTTTCCTGGTACTCCATCTTCCCCTCAAGCTCCACAAAACCTGGACGCTCCAGCAACAGCCTCTTCGCCTCTTCCACCTGTGTCCGCTGCTCCCACCTCCACCTTCCCTATGCCCTCTGCTGCAGGAAGCCCTTCTGTGTTCTCCTTTGGCCCTTCATCCTTCAAGTCTTCTGCTTCTGTCACCGGGGAGCCCCCACTGTACCCCACTGGCTCCGACAGCTCCAGAGCAGCACCAGGCTCTGGCACCTCCACTTTCTCTTTTGCTCCTCCTTCCAAAG
Seq C2 exon
GCTCCCTGGCGTCGACCCCTGCAGTGGCTCCTGTGGCCACATCTGCTGCTCCCTTCACTTTTGGTTTTAAGCCCACCTTGGAAAGCACACCTATGTCCAGTACCCCAAACACAGGGATGAAGCCTTCGTTCCCTCCCTCGGCCTCTTCGGTGAAAGTCAACCTGAATGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001855-25-24,25-23-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=NA C2=0.770
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCCGGTTCTCCTGTTACT
R:
TTGACTTTCACCGAAGAGGCC
Band lengths:
300-582
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types