MmuALTA1002892-3/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000006471 | Ndor1
Description
NADPH dependent diflavin oxidoreductase 1 [Source:MGI Symbol;Acc:MGI:1926047]
Coordinates
chr2:25251748-25254941:-
Coord C1 exon
chr2:25254864-25254941
Coord A exon
chr2:25251819-25251868
Coord C2 exon
chr2:25251748-25251818
Length
50 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
TCTCCCTGCTGGGACCTCAGACA
3' ss Score
3.49
Exon sequences
Seq C1 exon
GCGAATCTCATTAGGGAGCCCCTGGTGATATTTGTTTGTGCGACCACAGGCCAAGGAGACCCTCCTGACAACATGAAG
Seq A exon
ACAGAAAACTGGCCTGAGCTGAGGTCCTAACAGTTTTCCTATGGCTACAG
Seq C2 exon
AACTTCTGGAGGTTCATATTCCGGAAGAGCCTGCCGTCCAGCTCCCTCTGTCAAATGGATTTTGCTGTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006471-3-12,3-11,3-10-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.053 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0025820=Flavodoxin_1=PU(27.9=52.7)
A:
NA
C2:
PF0025820=Flavodoxin_1=FE(27.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGAATCTCATTAGGGAGCCC
R:
CCATTTGACAGAGGGAGCTGG
Band lengths:
136-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types