MmuALTA1003748-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000011831 | Evi5
Description
ecotropic viral integration site 5 [Source:MGI Symbol;Acc:MGI:104736]
Coordinates
chr5:107753882-107764771:-
Coord C1 exon
chr5:107764676-107764771
Coord A exon
chr5:107753892-107753894
Coord C2 exon
chr5:107753882-107753891
Length
3 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
TCACGCATAACATGATGAAGTAG
3' ss Score
-6.29
Exon sequences
Seq C1 exon
AAAGAAGAGGGCAAGCTCCAAGGACAGCTTAACAGGTCTGACTCTAACCAGTACATTAGGGAACTGAAGGACCAGATAGCAGAGCTGACTCATGAG
Seq A exon
TAG
Seq C2 exon
TGCACATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000011831-70-69,70-68-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types