MmuALTA1003755-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000011832 | Evi5l
Description
ecotropic viral integration site 5 like [Source:MGI Symbol;Acc:MGI:2442167]
Coordinates
chr8:4206496-4210648:+
Coord C1 exon
chr8:4206496-4206718
Coord A exon
NA
Coord C2 exon
chr8:4210548-4210648
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGCT
5' ss Score
6.77
3' ss Seq
AGTCTCCACTTCCACCACAGTCC
3' ss Score
5.39
Exon sequences
Seq C1 exon
GTGCGGTTGCTGAAAGGCCCACCGACATTCGAGGACCCGCTGGCTTTCGATGGGCTCAGCCTAACGCGGCACCTGGATGAGGATTCGCTACCATCTTCTGATGAGGAGCTGCTGGGCGTGGGTGTGGGCGTGGGCGCAGCCCTGCAGGACCCACTCTACCCTCTCTCTCCCCGGGACGCGCGCTTCTTCAGAAGCCTGGATCGGCCAGCCAAGGACAGCGAAG
Seq A exon
NA
Seq C2 exon
TCCAGTCACCCTGTGGGGAGGCCACATCATCTGGGGAGAAGCTGGTGACCGAAGTGATGCTGGCACGAGACTCGTCCAAGGGAGACAGCAATTCGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000011832-51-50,51-49-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.700 A=NA C2=0.860
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACCCACTCTACCCTCTCT
R:
CACTTCGGTCACCAGCTTCTC
Band lengths:
134-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types