MmuALTA1004250-3/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000015087 | Rabl6
Description
RAB, member RAS oncogene family-like 6 [Source:MGI Symbol;Acc:MGI:2442633]
Coordinates
chr2:25584857-25585536:-
Coord C1 exon
chr2:25585308-25585536
Coord A exon
chr2:25584940-25584996
Coord C2 exon
chr2:25584857-25584939
Length
57 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
3' ss Seq
TTGCCAACCTTGTTTCCCAGATC
3' ss Score
7.79
Exon sequences
Seq C1 exon
GTCCTCCACCAAGGTCTCACATCCACAAAAGAAGAGAGCTCCCACGAGAGGCACGCCACCGTGGTCAGATGGTCTCACCACTGATGACTCTGAAAGACCCCAGGAAGGGAAGGACAAACAGGTGTCATCAGAGAGTGATCCTGAGGGGCCCATTGCTGCCCAGATGCTGTCCTTCGTCATGGATGACCCAGACTTTGAAAGTGATGAATCAGATACACAGAGGAGAATG
Seq A exon
ATCCCTCGGAGTGGTCAGGGCACAATCGGCCTACCAGCTGCTCTCTTTCCAGGGCAG
Seq C2 exon
GTTTCCAGTAAGAGAAGACCTCTCTGATGTAACTGATGAGGACACTGGCCCTGCTCAGCCACCTCCACCTTCCAAGCTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015087-30-43,30-42,30-41-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGTCCTTCGTCATGGATG
R:
CTGGGAGCTTGGAAGGTGGAG
Band lengths:
148-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types