MmuALTA1004407-1/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000015468 | Notch4
Description
notch 4 [Source:MGI Symbol;Acc:MGI:107471]
Coordinates
chr17:34575407-34576526:+
Coord C1 exon
chr17:34575407-34575559
Coord A exon
NA
Coord C2 exon
chr17:34576409-34576526
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
TCACAGACTCCTCTCTCCAGCCT
3' ss Score
4.56
Exon sequences
Seq C1 exon
GGTTGACCTGTAGTGAGGAGGTGACAGCTTGTCACTCAGGGCCCTGTCTCAATGGTGGCTCCTGCAGCATCCGTCCTGAGGGCTATTCCTGCACCTGCCTTCCAAGTCACACAGGTCGCCACTGCCAGACTGCCGTGGACCACTGTGTGTCTG
Seq A exon
NA
Seq C2 exon
CCTCGTGCCTCAATGGGGGTACCTGTGTGAACAAGCCTGGCACTTTCTTCTGCCTCTGTGCCACTGGCTTCCAGGGGCTGCACTGTGAGGAGAAGACTAACCCCAGCTGTGCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015468-18-24,18-23,18-22-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(6.5=3.8),PF0000822=EGF=WD(100=59.6),PF0000822=EGF=PU(9.7=5.8)
A:
NA
C2:
PF0000822=EGF=PD(87.1=67.5),PF0000822=EGF=PU(9.7=7.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCCAAGTCACACAGGTCG
R:
AAAGTGCCAGGCTTGTTCACA
Band lengths:
102-116
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types