MmuALTA1007265-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000020695 | Mrc2
Description
mannose receptor, C type 2 [Source:MGI Symbol;Acc:MGI:107818]
Coordinates
chr11:105331884-105332299:+
Coord C1 exon
chr11:105331884-105332072
Coord A exon
chr11:105332194-105332235
Coord C2 exon
chr11:105332236-105332299
Length
42 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
GGCCTGGGGCTGACCTCAAGGTC
3' ss Score
1.77
Exon sequences
Seq C1 exon
ACCGGTGGACCAATGTCAAGGTGGAATGTGACCCCAGCTGGCAGCCCTTCCAGGGCCACTGCTACCGCCTGCAGGCCGAGAAGCGCAGCTGGCAGGAGTCCAAGAGGGCGTGTCTGCGGGGTGGGGGTGACCTCCTTAGCATCCACAGCATGGCTGAGCTGGAGTTCATCACCAAACAGATCAAGCAAG
Seq A exon
GTCTTCTCCCTTTCCTTTCTCTCCTGCCCTCCTGTACTCCAG
Seq C2 exon
AGGTGGAGGAGCTATGGATTGGCCTCAATGATTTGAAACTGCAGATGAATTTTGAGTGGTCCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020695-14-13,14-12-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PU(34.3=57.8)
A:
NA
C2:
PF0005916=Lectin_C=FE(47.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTGGCAGGAGTCCAAGAG
R:
TTGAGGCCAATCCATAGCTCC
Band lengths:
132-174
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types