MmuALTA1007273-3/4 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000020695 | Mrc2
Description
mannose receptor, C type 2 [Source:MGI Symbol;Acc:MGI:107818]
Coordinates
chr11:105346210-105346593:+
Coord C1 exon
chr11:105346210-105346324
Coord A exon
chr11:105346430-105346494
Coord C2 exon
chr11:105346495-105346593
Length
65 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
3' ss Seq
TTTCTTCTGGGGGACTGCAGCAT
3' ss Score
3.12
Exon sequences
Seq C1 exon
TGTTTCCGAATCCAGGGCCAGGACCCCCAGGACAGGGTGAAATGGTCAGAGGCACAGTTCTCCTGTGAACAGCAAGAAGCCCAGCTGGTCACCATTGCAAACCCCTTAGAGCAAG
Seq A exon
CATTTATCACAGCCAGCCTCCCCAACGTGACCTTTGACCTTTGGATTGGCCTGCATGCCTCTCAG
Seq C2 exon
AGGGACTTCCAGTGGATTGAACAAGAACCCCTGCTCTATACCAACTGGGCACCAGGAGAGCCCTCTGGCCCCAGCCCTGCTCCCAGTGGCACCAAGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020695-33-42,33-41,33-40,33-39-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.103 A=NA C2=0.327
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PU(23.9=71.8)
A:
NA
C2:
PF0005916=Lectin_C=FE(46.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTCCGAATCCAGGGCCAG
R:
GGTGCCCAGTTGGTATAGAGC
Band lengths:
167-232
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types