MmuALTA1007274-3/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000020695 | Mrc2
Description
mannose receptor, C type 2 [Source:MGI Symbol;Acc:MGI:107818]
Coordinates
chr11:105346430-105346828:+
Coord C1 exon
chr11:105346430-105346593
Coord A exon
chr11:105346707-105346724
Coord C2 exon
chr11:105346725-105346828
Length
18 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGG
5' ss Score
9.35
3' ss Seq
ACTGAGGTTCCCCTAAGTAGCCT
3' ss Score
0.21
Exon sequences
Seq C1 exon
CATTTATCACAGCCAGCCTCCCCAACGTGACCTTTGACCTTTGGATTGGCCTGCATGCCTCTCAGAGGGACTTCCAGTGGATTGAACAAGAACCCCTGCTCTATACCAACTGGGCACCAGGAGAGCCCTCTGGCCCCAGCCCTGCTCCCAGTGGCACCAAGCCG
Seq A exon
CCTTTTCCCCCAGACCAG
Seq C2 exon
CTGTGCGGTGATCCTGCACAGCCCCTCAGCCCACTTCACTGGCCGCTGGGATGATCGGAGCTGCACAGAGGAGACGCATGGCTTCATCTGCCAGAAGGGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020695-34-45,34-44,34-43-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.327 A=NA C2=0.216
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(46.2=100)
A:
NA
C2:
PF0005916=Lectin_C=PD(28.2=89.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCTCTATACCAACTGGGC
R:
AGTGAAGTGGGCTGAGGGG
Band lengths:
110-128
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types