MmuALTA1007275-3/5 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000020695 | Mrc2
Description
mannose receptor, C type 2 [Source:MGI Symbol;Acc:MGI:107818]
Coordinates
chr11:105346720-105347473:+
Coord C1 exon
chr11:105346720-105346828
Coord A exon
chr11:105347262-105347422
Coord C2 exon
chr11:105347423-105347473
Length
161 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAC
5' ss Score
7.29
3' ss Seq
GCTAAGCCCATCCCCAGCAGCAA
3' ss Score
-1.29
Exon sequences
Seq C1 exon
ACCAGCTGTGCGGTGATCCTGCACAGCCCCTCAGCCCACTTCACTGGCCGCTGGGATGATCGGAGCTGCACAGAGGAGACGCATGGCTTCATCTGCCAGAAGGGCACAG
Seq A exon
CAACACCCCCTGCCCCGGGCGCTGAGCTCTCCTATCTCAACCACACCTTCCGGCTGCTGCAGAAGCCACTGCGCTGGAAAGATGCTCTCCTGCTGTGTGAGAGCCGAAATGCCAGCCTGGCACACGTGCCCGATCCCTACACACAAGCCTTCCTCACACAG
Seq C2 exon
GCTGCACGGGGGCTGCAAACACCACTGTGGATCGGGCTGGCCAGTGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020695-35-50,35-49,35-48,35-47,35-46-3/5
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.216 A=NA C2=0.200
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PD(28.2=89.2)
A:
NA
C2:
PF0005916=Lectin_C=PU(47.1=61.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTGTGCGGTGATCCTG
R:
CTCACTGGCCAGCCCGATC
Band lengths:
155-316
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types