MmuALTA1009698-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000022201 | Zfr
Description
zinc finger RNA binding protein [Source:MGI Symbol;Acc:MGI:1341890]
Coordinates
chr15:12180622-12180940:+
Coord C1 exon
chr15:12180622-12180733
Coord A exon
chr15:12180843-12180846
Coord C2 exon
chr15:12180847-12180940
Length
4 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
TCTCTTTACAATGACTATAGGCA
3' ss Score
4.83
Exon sequences
Seq C1 exon
GCTATGGAGTTACTGGTGGAGAAGGCAATTAGCAGTGCTTCTAGTCCTCAAAGCCCTGGAGATGCCCTGAGAAGAGTATTTGAGTGCATTTCTTCAGGGATTATTCTCAAAG
Seq A exon
GCAG
Seq C2 exon
CCCTGGACTTCTGGACCCTTGTGAAAAGGATCCCTTTGACACTTTGGCAACAATGACTGACCAACAGCGTGAAGACATTACATCCAGTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022201-52-54,52-53-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=NA C2=0.149
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(14.9=100)
A:
NA
C2:
PF075289=DZF=FE(12.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCCTCAAAGCCCTGGAGAT
R:
TCACAAGGGTCCAGAAGTCCA
Band lengths:
94-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types