MmuALTA1009798-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000022262 | Dnah5
Description
dynein, axonemal, heavy chain 5 [Source:MGI Symbol;Acc:MGI:107718]
Coordinates
chr15:28397051-28401966:+
Coord C1 exon
chr15:28397051-28397254
Coord A exon
chr15:28401787-28401789
Coord C2 exon
chr15:28401790-28401966
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
3' ss Seq
ACGTTTTTTTCCTTCTACAGCAG
3' ss Score
9.91
Exon sequences
Seq C1 exon
ACCATCAAGCCCTCTGACATTGCCACAGTGCGCACCCTGGGCAGACCCCCTCACCTGATCATGCGGATCATGGACTGTGTGCTGCTGCTGTTTCAGAGGAGGGTCAATGCGGTGAAAATTGACGTGGACAAAGGCTGCACCATGCCTTCCTGGCAGGAGTCTTTGAAATTGATGACAGCAGGAAACTTTCTCCAGAACCTACAG
Seq A exon
CAG
Seq C2 exon
TTCCCCAAAGACACGATCAATGAAGAAGTGATAGAATTTTTGAATCCTTACTTTGAAATGTCCGACTACAACATCGAGACGGCCAAGCGCGTCTGTGGGAATGTAGCCGGACTTTGTTCCTGGACCAAAGCTATGGCTTCCTTTTTTTCTATAAACAAGGAGGTGCTCCCTCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022262-65-62,65-61-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF060089=Laminin_I=PD(3.3=5.9),PF127772=MT=FE(19.2=100)
A:
NA
C2:
PF127772=MT=FE(16.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGAAACTTTCTCCAGAACCT
R:
CGTCTCGATGTTGTAGTCGGAC
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types