MmuALTA1010100-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000022466 | Rpap3
Description
RNA polymerase II associated protein 3 [Source:MGI Symbol;Acc:MGI:1277218]
Coordinates
chr15:97683827-97684103:-
Coord C1 exon
chr15:97684033-97684103
Coord A exon
NA
Coord C2 exon
chr15:97683827-97683925
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGTG
5' ss Score
5.56
3' ss Seq
GTTTCAAATTTCTTTTCAAGGAA
3' ss Score
8.47
Exon sequences
Seq C1 exon
ACTTTGAGACTGTTTTACTTCTGGAACCTGGAAATAAGCAAGCGGCGACCGAGCTTTCCAGAATCAAAAAG
Seq A exon
NA
Seq C2 exon
GAACTAATAGAGAAAGGCCACTGGGATGATGTCTTCCTTGACTCCACACAGAGACACCATGTGGTGAAAGCTGTGGATAATCCTCCTCGGGGCTCCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022466-24-19,24-18-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=NA C2=0.394
Domain overlap (PFAM):
C1:
PF0051523=TPR_1=PD(32.4=45.8)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGGAAATAAGCAAGCGGC
R:
CCACATGGTGTCTCTGTGTGG
Band lengths:
110-132
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types