MmuALTA1012528-2/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000024485 | Slc4a9
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 9 [Source:MGI Symbol;Acc:MGI:2443384]
Coordinates
chr18:36533185-36533762:+
Coord C1 exon
chr18:36533185-36533243
Coord A exon
chr18:36533577-36533729
Coord C2 exon
chr18:36533730-36533762
Length
153 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGA
5' ss Score
5.46
3' ss Seq
ACCACTCCTCTGTTCAGCAGCCA
3' ss Score
4.29
Exon sequences
Seq C1 exon
GAAACACGTCTGAATGGACGAGTGCAAAGCTCAAAGACACAGAGGACATCTTAAGTGTG
Seq A exon
CCAGGTCTAGTCAATGCTTCCTTCCTGCCTCCACCTGAGTGCATCCGGCAAGGAGGTCACCCTCTCGGCCCCAGCTGTCACACGGTGCCAGACATCGCCTTCTTCTCCCTTCTCCTCTTCTTTACTTCTTTCCTTTGTGCCATTGCTCTCAAG
Seq C2 exon
CACATAAAGAACAGCCGCTTCTTCCCCTCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024485-18-21,18-20,18-19-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(4.5=100)
A:
NA
C2:
PF0095516=HCO3_cotransp=FE(14.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAATGGACGAGTGCAAAGCT
R:
CACAGAGGGGAAGAAGCGG
Band lengths:
82-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types