MmuALTA1012607-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000024529 | Lox
Description
lysyl oxidase [Source:MGI Symbol;Acc:MGI:96817]
Coordinates
chr18:52528717-52529867:-
Coord C1 exon
chr18:52529831-52529867
Coord A exon
NA
Coord C2 exon
chr18:52528717-52529366
Length
0 bp
Sequences
Splice sites
5' ss Seq
GATGTGTGT
5' ss Score
2.34
3' ss Seq
GGTCTTCCTTTTTCTCCTAGCCA
3' ss Score
6.37
Exon sequences
Seq C1 exon
ATGTTCGGCCCAGATTAAGTCGAGTGTGTCTCAGGAT
Seq A exon
NA
Seq C2 exon
CCACGTCCTCCCCGAGAAGGGACGAGCCGGGAGCACCATGCGTTTCGCCTGGGCTGTGCTCCTTCTGGGGCCACTGCAGCTTTGTCCCCTTCTCCGCTGCGCCCCGCAGACCCCGCGCGAGCCGCCCGCCGCCCCTGGTGCCTGGCGCCAGACAATCCAATGGGAGAACAACGGGCAGGTGTTCAGTCTGCTGAGCCTCGGGGCGCAGTACCAGCCTCAGCGACGCCGCGACCCCAGTGCCACTGCCCGGAGACCCGACGGCGACGCAGCCTCGCAGCCGCGCACGCCCATTCTTCTGCTGCGTGACAACCGCACCGCCTCTACCCGTGCGAGGACGCCAAGCCCGTCTGGGGTCGCCGCGGGTCGTCCCCGGCCCGCCGCCCGCCACTGGTTCCAAGCTGGTTTCTCGCCGTCGGGGGCTCGCGATGGAGCCTCACGGCGCGCGGCGAACCGGACTGCATCGCCACAGCCTCCGCAGCTCAGTAATCTGAGGCCACCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024529-3-2,3-1-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.761
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCGAGTGTGTCTCAGGAT
R:
GAAGAATGGGCGTGCGCG
Band lengths:
316-551
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types