MmuALTA1015881-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000026785 | Pkn3
Description
protein kinase N3 [Source:MGI Symbol;Acc:MGI:2388285]
Coordinates
chr2:30084691-30085012:+
Coord C1 exon
chr2:30084691-30084766
Coord A exon
chr2:30084850-30084934
Coord C2 exon
chr2:30084935-30085012
Length
85 bp
Sequences
Splice sites
5' ss Seq
GAGGTGTGG
5' ss Score
4.48
3' ss Seq
GCCCCGCCTGCCTCCTCTAGGCC
3' ss Score
10.22
Exon sequences
Seq C1 exon
GTCACCTTCTGCGAGCCTGTCATTGAAAGGAGGCCTCGGCTGCAGAGGCAGAGATGCATTTTCTCTAAGCGGAGAG
Seq A exon
GCCGGGATTTCATGAGAGCTTCCCAGATGAACCTCAGCATGGCAGCCTGGGGGCGTCTGGTCATGAGCTTGCTGCCCCCCTGCAG
Seq C2 exon
CTCACCAAACACAGCCAGTCCCCCTAAAGGGCGCCCTTCAACAGCGGTCTGTGGGACCCCCAGTGCTGCTTCCCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026785-21-18,21-17-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.382
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTTCTGCGAGCCTGTCATT
R:
CTCGGGGAAGCAGCACTG
Band lengths:
151-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types