MmuALTA1016129-4/5 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000026915 | Strbp
Description
spermatid perinuclear RNA binding protein [Source:MGI Symbol;Acc:MGI:104626]
Coordinates
chr2:37579538-37580806:-
Coord C1 exon
chr2:37580673-37580806
Coord A exon
chr2:37579750-37579802
Coord C2 exon
chr2:37579538-37579749
Length
53 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
CTTTACATTTCTTTCTATAGCAG
3' ss Score
8
Exon sequences
Seq C1 exon
GTTAATACTTTTAAGCAGTTTTCAGCACGTTTATCTCACTTTATTCTCGTTCTCCTCGGACCTCCGTAGCCATATCACTTGTATAAAATAGGCTGAGATATAGTGACTGTAAGCTGTGATCTCAGTATTCAAAG
Seq A exon
CAGTTTCTGTTCATCTCTAGCATTAAGGCTGCTGAAACTTTGTTCTCACACAG
Seq C2 exon
AACCTGCAGTTCATGAGGTCGGCTTCTGTTAAAGGCTGTACAAAGCAGAGCAGAGAAGTGCAGTGCACTGTAATCCTGTTCCTGCTGATGCCAGGTCCTTTTTCTGGGACCAGGGAACAGAGGCTATGATCAGTGCAAGTATCTTAAGTTTTCTGATGGAATTCCTGATGGAATTGGCCTTGTTGTAAATAAATACCCTACTTTGGAAGATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026915-52-63,52-62,52-61,52-60,52-59-4/5
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTCGTTCTCCTCGGACCTC
R:
CTGCTCTGCTTTGTACAGCCT
Band lengths:
144-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types