MmuALTA1016156-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000026925 | Inpp5e
Description
inositol polyphosphate-5-phosphatase E [Source:MGI Symbol;Acc:MGI:1927753]
Coordinates
chr2:26400886-26401698:-
Coord C1 exon
chr2:26401601-26401698
Coord A exon
NA
Coord C2 exon
chr2:26400886-26400908
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
ATGTCCCTGTTTATCCGTAGGGA
3' ss Score
10.6
Exon sequences
Seq C1 exon
GAGCTCCCAGCGAGCCTGGATGAGTTTCTGCTCCCCACCGAGGCTGACTACACTCAGGACCTGTATGTCATTGGAATTCAGGAGGGCTGCTCTGACAG
Seq A exon
NA
Seq C2 exon
GGACCTCATCTGGTTCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026925-8-8,8-7-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=NA C2=0.021
Domain overlap (PFAM):
C1:
PF0337218=Exo_endo_phos=FE(11.4=100)
A:
NA
C2:
PF0337218=Exo_endo_phos=FE(4.0=100)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCGAGCCTGGATGAGTTTC
R:
CTGAGCAGAACCAGATGAGGT
Band lengths:
114-216
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types