MmuALTA1016409-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000027109 | Sp3
Description
trans-acting transcription factor 3 [Source:MGI Symbol;Acc:MGI:1277166]
Coordinates
chr2:72979487-72980446:-
Coord C1 exon
chr2:72980250-72980446
Coord A exon
NA
Coord C2 exon
chr2:72979487-72979621
Length
0 bp
Sequences
Splice sites
5' ss Seq
CCGGTACGT
5' ss Score
10.49
3' ss Seq
TGCCTGCAGCTCCCGAAAAGCCC
3' ss Score
-2.7
Exon sequences
Seq C1 exon
CCCTTTTGGGCTGGAGGCTCCACCTTTTGTGTTTCCCGCACAGTCAATCAAAATAGGAAAAAAAAAATTCCCCGGACCGCTCCGGCCGTGTCCGCCGCCGCTTCCCGCATCCTCTCCCGCCGCCGCCGCCTTCGCTTCTCACCATGTGTAAGGCGGCGGGGAGCCCCGCCTGAGCTGTCCTAAACACACTATGACCG
Seq A exon
NA
Seq C2 exon
CCCGTGAAACAAGAGGAAATGGCTGCCTTGGACGTGGACGGCGGCGGAGGCGGCGGCGGCCACGGCGAGTATCTACAGCAGCAGCAGCAGCAACAGCAGCAGCACGGAAACGGCGCGGCGGCGGCGGCGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027109-0-1,0-0-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCGCTTCTCACCATGTGT
R:
CCAAGGCAGCCATTTCCTCTT
Band lengths:
100-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types