MmuALTA1016581-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000027249 | F2
Description
coagulation factor II [Source:MGI Symbol;Acc:MGI:88380]
Coordinates
chr2:91632979-91633296:-
Coord C1 exon
chr2:91633191-91633296
Coord A exon
NA
Coord C2 exon
chr2:91632979-91633083
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
3' ss Seq
CACCACCCATCCTGGGGCAGACC
3' ss Score
5.11
Exon sequences
Seq C1 exon
GTCGCTGTGCTATGGATCTGGGTGTGAACTACCTTGGGACTGTGAATGTCACCCATACCGGTATCCAGTGCCAGCTGTGGCGGAGCCGCTACCCCCACAAGCCTGA
Seq A exon
NA
Seq C2 exon
ACCTGAAGGAGAACTTCTGCCGCAATCCAGACAGCAGTACCACGGGACCCTGGTGCTACACCACAGATCCTACTGTGCGCAGAGAGGAATGCAGTGTCCCTGTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027249-10-8,10-7-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=NA C2=0.323
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PU(41.8=91.7)
A:
NA
C2:
PF0005113=Kringle=PD(57.0=95.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGTGTGAACTACCTTGGGA
R:
CTGGATTGCGGCAGAAGTTCT
Band lengths:
118-147
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types