MmuALTA1017027-1/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000027560 | Dok5
Description
docking protein 5 [Source:MGI Symbol;Acc:MGI:1924079]
Coordinates
chr2:170830069-170833071:+
Coord C1 exon
chr2:170830069-170830188
Coord A exon
NA
Coord C2 exon
chr2:170832947-170833071
Length
0 bp
Sequences
Splice sites
5' ss Seq
GCGGTATGT
5' ss Score
9.45
3' ss Seq
ATGGCGAATGTGCCTTGCAGATT
3' ss Score
6.32
Exon sequences
Seq C1 exon
ATCTTGAGGCAGACGAATGGTGCAAAGTTCTCCAGATGGAGTGTGTGGGGACCAGAATCAATGACATCAGCCTCGGAGAGCCTGATTTATTGGCTACCGGGGTGGAACGCGAGCAGAGCG
Seq A exon
NA
Seq C2 exon
ATTACATATGAGTACATCTGTCTTTGGGACGTCCAGAATCCCAGAGTTAAACTCATCTCTTGGCCGCTAAGTGCCCTGCGGCGTTATGGACGAGACACCACGTGGTTCACTTTTGAGGCAGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027560-8-8,8-7,8-6-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(14.3=36.6),PF0217412=IRS=PU(2.0=4.9)
A:
NA
C2:
PF0217412=IRS=FE(64.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGATGGAGTGTGTGGGGA
R:
TCTGGACGTCCCAAAGACAGA
Band lengths:
126-152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types