MmuALTA1018158-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000028369 | Svep1
Description
sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 [Source:MGI Symbol;Acc:MGI:1928849]
Coordinates
chr4:58096159-58097441:-
Coord C1 exon
chr4:58097284-58097441
Coord A exon
chr4:58096356-58096360
Coord C2 exon
chr4:58096159-58096355
Length
5 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
ACCCTCCTTATTTGTTGCAGAAC
3' ss Score
9.42
Exon sequences
Seq C1 exon
GTGTCAATGTCCAGCAGGCTTCACAGGGACACACTGTGAACTGAACATCAACGAGTGTCAGTCCAACCCATGTAGGAACCAGGCCACCTGTGTGGATGAACTAAACTCATACAGTTGTAAATGTCAGCCAGGATTTTCAGGCCACAGGTGTGAGACAG
Seq A exon
AACAG
Seq C2 exon
CCTTCCGGTTTTAACCTGGATTTTGAAGTTTCTGGCATCTACGGGTACGTCCTGCTAGATGGAGTGCTGCCAACCCTCCATGCCATAACCTGCGCATTCTGGATGAAATCCTCTGATGTCATCAACTACGGGACGCCCATCTCCTATGCACTTGAGGATGACAAAGACAACACCTTCCTCCTGACTGATTACAACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028369-29-30,29-29-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(35.5=20.4),PF0000822=EGF=WD(100=57.4)
A:
NA
C2:
PF0035412=Pentaxin=PU(29.5=83.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCAGCCAGGATTTTCAGGC
R:
TCCATCTAGCAGGACGTACCC
Band lengths:
100-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types