MmuALTA1018421-3/4 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000028495 | Rps6
Description
ribosomal protein S6 [Source:MGI Symbol;Acc:MGI:98159]
Coordinates
chr4:86856728-86857412:-
Coord C1 exon
chr4:86857321-86857412
Coord A exon
chr4:86856776-86856826
Coord C2 exon
chr4:86856728-86856775
Length
51 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
3' ss Seq
TCCCCGCCACCGGCTGTCAGAAG
3' ss Score
2.86
Exon sequences
Seq C1 exon
GAGAACTTAGAGCGCTATGTGCCCTGGGTTAAGCGGAAGTCGGGCCTCTTTTTCGTGACGCCTCCCAGGCGCTCGGCTGTGTCAAGATGAAG
Seq A exon
AAGCTCATCGAGGTGGATGACGAGCGCAAGCTCCGCACCTTCTATGAGAAG
Seq C2 exon
CGCATGGCCACGGAAGTAGCCGCTGATGCTCTTGGTGAAGAGTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028495-0-4,0-3,0-2,0-0-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0109214=Ribosomal_S6e=PU(0.8=50.0)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACTTAGAGCGCTATGTGCC
R:
TCTTCACCAAGAGCATCAGC
Band lengths:
132-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types