MmuALTA1020155-3/4 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000029517 | Ankrd7
Description
ankyrin repeat domain 7 [Source:MGI Symbol;Acc:MGI:1922446]
Coordinates
chr6:18869233-18870031:+
Coord C1 exon
chr6:18869233-18869339
Coord A exon
chr6:18869894-18869954
Coord C2 exon
chr6:18869955-18870031
Length
61 bp
Sequences
Splice sites
5' ss Seq
CAGGTATAG
5' ss Score
8.73
3' ss Seq
TTGTGAATGTCTTGCTCCAGAAC
3' ss Score
6.85
Exon sequences
Seq C1 exon
GACGGTCACACTCCGCTTTTACTTGCTGTTGCTGAAAATAATGAAAATATGGTAAAATTCCTTCTGAAGAAAGGAGCAGATGTAAATGCATCAGATAAAAACCACAG
Seq A exon
AACAGCCATCATGATTGCTCTGATTGTTGAACCAACAAGTTCTGTAAAACTTCTTCTTCAG
Seq C2 exon
CAAGATACGGACCTAGCCCACAAAGATATTTATGGATTTACAGCTGAGGAATATGCTTCATTTAATGGCTTTACTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029517-3-7,3-6,3-5,3-4-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(44.9=86.1),PF127962=Ank_2=PU(10.8=19.4)
A:
NA
C2:
PF127962=Ank_2=FE(70.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTCACACTCCGCTTTTACT
R:
ATCTTTGTGGGCTAGGTCCGT
Band lengths:
132-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types