MmuALTA1020992-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000030131 | Mug2
Description
murinoglobulin 2 [Source:MGI Symbol;Acc:MGI:99836]
Coordinates
chr6:122079561-122081386:+
Coord C1 exon
chr6:122079561-122079784
Coord A exon
chr6:122081315-122081317
Coord C2 exon
chr6:122081318-122081386
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
3' ss Seq
GTAATTGCCTGTTACTTCAGCAG
3' ss Score
2.34
Exon sequences
Seq C1 exon
ACAACTCCATCCACTGGGAAAGACCTCAGAAACCCAGGAAATCCGAACACAATTTGTACAAACCCCAGGCTTCCTCTGTTGAAGTAGAGATGAATGCCTATGTGGTCCTGGCTCGCCTCACTGCCCAGCCAGCCCCATCCCCTGAGGATCTGACTTTGTCAAGGAGCACCATCATGTGGCTCACAAAGCAACAGAATTCCAATGGTGGCTTCTCCTCCACACAG
Seq A exon
CAG
Seq C2 exon
GTCCCATTACCAGACATTCCTGGGGACTATACCATCAGTGTATCAGGGGAAGGATGTGTGTATGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030131-35-41,35-40-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.373 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(49.0=100)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAATGGTGGCTTCTCCTCC
R:
GCATACACACATCCTTCCCCTG
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types