MmuALTA1021027-3/4 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000030165 | Klrd1
Description
killer cell lectin-like receptor, subfamily D, member 1 [Source:MGI Symbol;Acc:MGI:1196275]
Coordinates
chr6:129593728-129595561:+
Coord C1 exon
chr6:129593728-129593790
Coord A exon
chr6:129595410-129595481
Coord C2 exon
chr6:129595482-129595561
Length
72 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
3' ss Seq
GGATGTGCTTTGCCTTTTAGTTT
3' ss Score
7.55
Exon sequences
Seq C1 exon
CATTTACTATACAGAACATTCAATCAACACCTTCTCCAACCACCACTGTAGAATTCCAGGAAG
Seq A exon
TTTCTGAATGCTGTGTTTGCCTGGACAAGTGGGTTGGGCATCAGTGCAATTGTTACTTTATTTCCAAAGAAG
Seq C2 exon
AAAAGTCTTGGAAAAGAAGCAGAGATTTCTGTGCTTCGCAGAATTCCAGCCTTCTTCAGCCCCAATCCAGAAATGAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030165-2-8,2-7,2-5,2-4-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083915=Ly49=FE(32.3=100)
A:
NA
C2:
PF0005916=Lectin_C=PU(27.6=52.9)
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTATACAGAACATTCAATCAACACC
R:
TTCATTTCTGGATTGGGGCTGA
Band lengths:
135-207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types