MmuALTA1022199-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000030963 | Umod
Description
uromodulin [Source:MGI Symbol;Acc:MGI:102674]
Coordinates
chr7:119478248-119479255:-
Coord C1 exon
chr7:119479152-119479255
Coord A exon
chr7:119478319-119478374
Coord C2 exon
chr7:119478248-119478318
Length
56 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
CTCTGTTCTCATGATTTCAGGCA
3' ss Score
8.19
Exon sequences
Seq C1 exon
AGAAGCAGAGAATAATCTGAGGGAGAGGGCCAGCCAAGGGCAGGCAAGTATATATTGATCACAGGCACTTACTTGTGAATGGACCAGTCCTGTCCTGGGTTCAG
Seq A exon
GCATCAGAAACACAAGGGAAATCCAAAGTACCTAACCCATCCTTGCCTTTGGGCAG
Seq C2 exon
GTGTTTCCAGGACAGAGGGCAGAGTGTAAAGGATGGGGATCCCTTTGACCTGGATGCTGCTGGTAATGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030963-1-2,1-1-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF129472=EGF_3=PU(2.9=3.3)
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAATCTGAGGGAGAGGGCCAG
R:
ATCCAGGTCAAAGGGATCCCC
Band lengths:
147-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types