MmuALTA1022886-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000031533 | Mrps31
Description
mitochondrial ribosomal protein S31 [Source:MGI Symbol;Acc:MGI:1913153]
Coordinates
chr8:22419727-22421450:+
Coord C1 exon
chr8:22419727-22419885
Coord A exon
NA
Coord C2 exon
chr8:22421310-22421450
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
TCCTGACCTTGTTATTTCAGCTT
3' ss Score
6.75
Exon sequences
Seq C1 exon
GAATGAGTTCCTGAGTCCTGAGTTGGTGGCTGCAGCGTCGGCTGTTGCAGATTCCCTACCTTTTGACAAGCAGACAACCAAGTCAGAGCTGCTCAGGCAGCTGCAGCAACACGAGGAGGAGTTGAGGGCTCAGAAGGACAGAGAGAAGCGCAGGATCAG
Seq A exon
NA
Seq C2 exon
CTTCACTCACATAATATCAAATATGAAAATTGCCAAGTCTCCCTCCGGGAGAGCTAGTACAAGGCCACAGCACCAGATTCAGTTTGACGAAGACATGGACAGTTCTCTTAAGCAGGAGAAGCCAACTGATTTCAGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031533-3-4,3-3-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.759 A=NA C2=0.823
Domain overlap (PFAM):
C1:
PF154331=MRP-S31=FE(17.9=100)
A:
NA
C2:
PF154331=MRP-S31=FE(15.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAACACGAGGAGGAGTTGAG
R:
AACTGAATCTGGTGCTGTGGC
Band lengths:
138-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types