MmuALTA1025643-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000033728 | Lrrc14
Description
leucine rich repeat containing 14 [Source:MGI Symbol;Acc:MGI:2445060]
Coordinates
chr15:76712867-76713985:+
Coord C1 exon
chr15:76712867-76713220
Coord A exon
chr15:76713717-76713815
Coord C2 exon
chr15:76713816-76713985
Length
99 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGC
5' ss Score
9.37
3' ss Seq
ACACTGTGGCCCTGCTACAGCTT
3' ss Score
5.26
Exon sequences
Seq C1 exon
GTGGCTGTCTGCCCAGTCCAGCACCATGCACACACTTGTGTTCCTCAGCACGCGTCAGGTCCTTCAGTGCCAGCCAGCTGCATGCCAGGCCCTGCCCCTGCTGCCCCGGGAACTCTTCCCTCTGCTCTTCAAGGTGGCCTTCATGGACAAAAAGACGCTTGTGCTGCGTGAGCTGGTGCACACGTGGCCCTTTCCCCTGCTCAGCTTCCAGCAGCTGCTGCAGGAGTGTGCCCACTGCAGTCGAGCCCTGCTGCAGGAGCGGCTCAGCACAGAAAGCATGCAGGCTGTGATCCTGGGGCTGACAGCTCGGATTCACACTCAAGAAACAGAGGCTGGCACGCAGCCCTTGTGCAG
Seq A exon
CTTTTAGATGCAGGCTGTCTGCGCCGGATAGACCTGCGCTTCAATAACCTGGGCTTGCGTGGCCTGTCTGTCATTATCCCACATGTGGCCCGCTTTCAG
Seq C2 exon
CACTTAGCTAGCCTGAGGCTGCACTACGTGCATGGGGACTCAAGACAGCCTTCCGTGGACGGGGAGGACAACTTTCGCTACTTTCTGGCCCAGATGGGCCGGTTTATGTGTCTTCGGGAGCTCAGCATGGGGTCTTCTCTCCTTTCAGGCAGGCTGGATCAACTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033728-9-9,9-8-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.004 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGAAACAGAGGCTGGCAC
R:
GGAGAGAAGACCCCATGCTGA
Band lengths:
178-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types