MmuALTA1025992-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000034116 | Vav1
Description
vav 1 oncogene [Source:MGI Symbol;Acc:MGI:98923]
Coordinates
chr17:57309452-57311900:+
Coord C1 exon
chr17:57309452-57309483
Coord A exon
NA
Coord C2 exon
chr17:57311784-57311900
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
ACTCAGGTGTGTCCTGGCAGGTA
3' ss Score
6.9
Exon sequences
Seq C1 exon
GGCCCTCCTCAGGACCTGTCTGTGCATCTCTG
Seq A exon
NA
Seq C2 exon
GTATGCGGGCCCTATGGAACGAGCAGGCGCTGAGGGCATCCTCACCAACCGTTCTGATGGGACCTATCTGGTGCGGCAGAGGGTGAAAGATACAGCGGAGTTCGCCATCAGCATTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034116-33-38,33-37-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.050
Domain overlap (PFAM):
C1:
PF0001719=SH2=PU(21.7=90.9)
A:
NA
C2:
PF0001719=SH2=PU(52.0=97.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCTCAGGACCTGTCTGTG
R:
GTCCCATCAGAACGGTTGGTG
Band lengths:
92-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types