MmuALTA1027098-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000035232 | Pdk3
Description
pyruvate dehydrogenase kinase, isoenzyme 3 [Source:MGI Symbol;Acc:MGI:2384308]
Coordinates
chrX:93783780-93788971:-
Coord C1 exon
chrX:93788894-93788971
Coord A exon
NA
Coord C2 exon
chrX:93783780-93783856
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAAA
5' ss Score
4.79
3' ss Seq
GGTTTTGTCTCTGTTTTCAGCCA
3' ss Score
8.25
Exon sequences
Seq C1 exon
ATGCATATGAAACAGCCAAGATGCTTTGTGAACAGTATTACCTGGTAGCTCCAGAGCTAGAAGTTGAAGAATTCAATG
Seq A exon
NA
Seq C2 exon
CCAAAGCGCCAAACAAACCCATTCAGGTAGTTTATGTGCCGTCACATCTGTTTCACATGCTATTTGAGCTGTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035232-12-13,12-12-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0251821=HATPase_c=PU(11.1=53.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCAAGATGCTTTGTGAACA
R:
TGTGAAACAGATGTGACGGCA
Band lengths:
123-159
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types