MmuALTA1027299-5/5 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000035459 | Stab2
Description
stabilin 2 [Source:MGI Symbol;Acc:MGI:2178743]
Coordinates
chr10:86872597-86873907:-
Coord C1 exon
chr10:86873824-86873907
Coord A exon
chr10:86872744-86873094
Coord C2 exon
chr10:86872597-86872743
Length
351 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
GTTTCCTGGTCTTTTTACAGTGA
3' ss Score
8.4
Exon sequences
Seq C1 exon
GAGCATGCTGTCCAAGAGCTTGCTGGACCTGGCCCCTTCACCGTGTTTGTGCCTTCATCTGACTCCTTCAACAGTGAGTCCAAG
Seq A exon
TGACTTCATAATTGTATTCTTTGTATCTTGCATCCAAGTAGAAATGTATCAAGAGTATCTTCTAGTGCTCTCTAGGAGGAACCCTCCCATGGTCTCTCTCAGCATGTCTCCCAAGAAAATTCTGTAGGACACTGGTATCCTTCAAGCAGCACTGTGACAAGCTGGGCTAGCGGCCCCTGAGGCTCCGCCCACCTACATTTTCATTGCCTTTCCTGACCAGCCTCTCCCTGTGGCCCCAACACAAACCAAGCCTGGCACTAGCTCCTCAGAGTTGTGGGAAAGAGGAGAGCAAACAAGATGTTCTAGCAACAGGCTCCTGCCTCTGGCCAACCTCCCTGGCCTCTCTTCCAG
Seq C2 exon
CTTAAAGTCTGGGATAAACAGGGCCTCATGTCCCAGATTCTACGGTATCACGTGGTGGCCTGCCAGCAGCTACTGCTGGAGAACCTAAAGGTGATCACGAGTGCCACAACCCTCCAAGGAGAGCCAATTTCCATCTCTGTCTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035459-66-74,66-73,66-72,66-71,66-70-5/5
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0246917=Fasciclin=FE(22.7=100)
A:
NA
C2:
PF0246917=Fasciclin=FE(40.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCATGCTGTCCAAGAGCTT
R:
TGAGAGACAGAGATGGAAATTGGC
Band lengths:
230-581
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types