MmuALTA1027669-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000035930 | Chst4
Description
carbohydrate (chondroitin 6/keratan) sulfotransferase 4 [Source:MGI Symbol;Acc:MGI:1349479]
Coordinates
chr8:110030881-110039377:-
Coord C1 exon
chr8:110039313-110039377
Coord A exon
NA
Coord C2 exon
chr8:110030881-110030981
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
GTCTTCTCCTTCTTCCGCAGGAT
3' ss Score
12.56
Exon sequences
Seq C1 exon
CGGTGCTGAGCCTGGCAGGCAGTGAGCGAGCCTCTCAGTCATTGTGGGCCCTGAGGAAGCCTAAG
Seq A exon
NA
Seq C2 exon
GATGATGCTGTTGAAGAAAGGGAGGCTGCTGATGTTCCTGGGTTCCCAGGTCATCGTTGTAGCTCTCTTCATCCATATGTCCGTCCACAGACACCTTTCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035930-1-4,1-3-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0068522=Sulfotransfer_1=WD(100=81.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCGAGCCTCTCAGTCATTG
R:
AGCTACAACGATGACCTGGGA
Band lengths:
106-126
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types