MmuALTA1029583-2/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000038026 | Kcnj9
Description
potassium inwardly-rectifying channel, subfamily J, member 9 [Source:MGI Symbol;Acc:MGI:108007]
Coordinates
chr1:172327998-172329318:-
Coord C1 exon
chr1:172329135-172329318
Coord A exon
chr1:172328099-172328128
Coord C2 exon
chr1:172327998-172328098
Length
30 bp
Sequences
Splice sites
5' ss Seq
TCTGTGAGT
5' ss Score
7
3' ss Seq
TCTTAATCCTTATTCTACAGACT
3' ss Score
7.3
Exon sequences
Seq C1 exon
TGGGAAGTGGGGATGACACAGATACCAAGTCCTAGTCTGAGCTGCCGTTACATTCAGGAGAAACAGCAGTGTCGGCGGCTCCCAATCTCAGAGGGAACCTAGGGTACTGGGGGAGATGGTGTCAGGGACATGGACGCCAACCCCCAAGGGTCCCTGCTGCTGGCTACTCTTCTCTCCAGGCTCT
Seq A exon
ACTTCTGTTCATATGGTCCATATCTCCTAG
Seq C2 exon
GGGACCCTGAAAGCCTAGGAACCGACTCTGGCCATCCATCTCTCCGGGAAGATTATAACCCAGAGTGCTTCTCAGGGGGGAAGAATTTGAAGCAAAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038026-0-4,0-2,0-1-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACTGGGGGAGATGGTGTCA
R:
CCAGAGTCGGTTCCTAGGCTT
Band lengths:
112-142
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types