MmuALTA1029636-3/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000038070 | Cntln
Description
centlein, centrosomal protein [Source:MGI Symbol;Acc:MGI:2443104]
Coordinates
chr4:85067480-85067880:+
Coord C1 exon
chr4:85067480-85067573
Coord A exon
chr4:85067657-85067742
Coord C2 exon
chr4:85067743-85067880
Length
86 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
GGAATATTGTTTTTATTTAGTTA
3' ss Score
4.45
Exon sequences
Seq C1 exon
AGTATTTCTCATAATAAGAACACCAAGAAAATGACATTTCAAAAGAAGAGTGGAAGCCTGCAGAAGAGCTTGCACAGTGCCCTTCCTGCCAGAG
Seq A exon
TTAACAGAGAAAAGTGCAAAAATCTACCTGCCCAGAAATCCAGTAGCAGCACCATTTCATTACGAGAACGGATCGTATCCTTGCAG
Seq C2 exon
CAACAGAACAGTTTGCTTCAGAACGCCAGGAGAGCAGCAGAGGCGTCTGCTAAGGAGTATAAAGAAGCGAACGAGAAGCTCCTCCATCAACAGCAGGTCAGCGATCACCGATTCCAGACCAGCAGACAGACAATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038070-43-52,43-51,43-50-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.919 A=NA C2=0.619
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGTGGAAGCCTGCAGAAGA
R:
TGTCTGTCTGCTGGTCTGGAA
Band lengths:
180-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types