MmuALTA1031227-2/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000039634 | Zfp189
Description
zinc finger protein 189 [Source:MGI Symbol;Acc:MGI:2444707]
Coordinates
chr4:49521423-49522482:+
Coord C1 exon
chr4:49521423-49521595
Coord A exon
chr4:49522398-49522400
Coord C2 exon
chr4:49522401-49522482
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TGGCTATGTTTCTTACTCAGGAG
3' ss Score
6.96
Exon sequences
Seq C1 exon
GAACTTGACCGCTCCGAGACAGAGGCAGGACCACACCAGACCCATCCGGTGAGCCCCTTCTCGCCGAGCCTTATTTCCAACAGCCATCTAGGCCTCATCAGAGCCCCAATGTCGTGTGGCTGCTATTCCTGAACGAGGCGATGGCGTCCCCAAGCCCACCGCTGGAGCCAAAG
Seq A exon
GAG
Seq C2 exon
GAGTGGGGTTATCTGGATCCAGCTCCGAGAAGCCTGTATAAAGATGTCATGATGGACAGCTACGGAAAGCTGGTCTCGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039634-2-5,2-4,2-3-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.172
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PU(0.1=0.0)
A:
NA
C2:
PF0135222=KRAB=FE(93.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAATGTCGTGTGGCTGCTAT
R:
CTTCTCGGAGCTGGATCCAGA
Band lengths:
100-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types