MmuALTA1031324-4/7 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000039735 | Fnbp1l
Description
formin binding protein 1-like [Source:MGI Symbol;Acc:MGI:1925642]
Coordinates
chr3:122540128-122542283:-
Coord C1 exon
chr3:122542125-122542283
Coord A exon
chr3:122540229-122540390
Coord C2 exon
chr3:122540128-122540228
Length
162 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCAG
5' ss Score
3.97
3' ss Seq
GTTTCATTTTGCATTTGTAGTGC
3' ss Score
6.73
Exon sequences
Seq C1 exon
GGCATAATGAAGGTACTCTGGCAATGAAAGAAGGTGAAGTTCTGTACATTATTGAGGAGGACAAAGGTGATGGATGGACAAGAGCTCGGAGACAGAACGGTGAAGAAGGCTACGTTCCCACAACATACATAGATGTTACTCTAGAGAAAAGCAGTAAAG
Seq A exon
TGCAAATCACTTTGTCAGACACCTCAGCACTAATGTTTCCATCTTAGTATCTGTGTATGCTGCTAAAACTTCCCTACTGCAAACGTTCCAGTTTTGACATGAAGACATAGTCTGTGAACCTGAAGTATTTACGATAAGAAAAAGAAAACATCTCTGCTCTAG
Seq C2 exon
CCTGCAGCCCAGTTACCGACTCTGAAATGTGACGCATCTTCAGCACCTCAGTCTGGGAGAATCTGGTCAGCACTGAAGGCCTGGCATAATAACACCGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039735-42-45,42-44,42-43,42-42,42-41,42-40,42-39-4/7
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.675 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0001823=SH3_1=PD(83.3=75.5)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCATAATGAAGGTACTCTGGCA
R:
ATTATGCCAGGCCTTCAGTGC
Band lengths:
249-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types