MmuALTA1031695-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000040188 | Scamp2
Description
secretory carrier membrane protein 2 [Source:MGI Symbol;Acc:MGI:1346518]
Coordinates
chr9:57577639-57578402:+
Coord C1 exon
chr9:57577639-57577737
Coord A exon
NA
Coord C2 exon
chr9:57578274-57578402
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTG
5' ss Score
9.04
3' ss Seq
AGTGGAGTTGTGTATTGCAGCTC
3' ss Score
3.96
Exon sequences
Seq C1 exon
ACAAATGCAGCGACAACAGTTCCTGCCACACAAGCTCCTGGGCCCTCCCAGCCAGCAGTTCTCCAGCCCTCAGTGGAACCAGCACAGCCAACGCCCCAG
Seq A exon
NA
Seq C2 exon
CTCCCGGTTAGACAGGCCAGCAAGTTTCTGCCTGCCCGATTCCTGGCAGCGGGTGAGCCCTCAGAGAGGCAGACGCTACTAGGAGGAGATAGTATTTCCAGGGACAGCCACAAGCGCAAGCCTTCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040188-19-10,19-9-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.767
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGCAGCGACAACAGTTCCT
R:
GAATCGGGCAGGCAGAAACTT
Band lengths:
138-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types